PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000241.1_g00012.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family TCP
Protein Properties Length: 114aa    MW: 11923.5 Da    PI: 6.674
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000241.1_g00012.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP81.62e-251662488
                      TCP 24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg 88
                             ++a+caar+F+L++eLG+++d +t++WLlqqa+p i+++tgt++++as+   a++ s+s++  s +
  Itr_sc000241.1_g00012.1  1 MPALCAARIFQLTRELGHKTDEETVQWLLQQAEPTIIAATGTGTIPASALvAAAEASVSEQGTSVS 66
                             9**********************************************8888444444444433333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.8E-19171IPR005333Transcription factor, TCP
PROSITE profilePS5136919.367139IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 114 aa     Download sequence    Send to blast
MPALCAARIF QLTRELGHKT DEETVQWLLQ QAEPTIIAAT GTGTIPASAL VAAAEASVSE  60
QGTSVSASLH EFAGIRSHWA VMGGANYLSR PQISSAAAIR SHWAVMVGTS GHLL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006437974.18e-35hypothetical protein CICLE_v10032374mg
RefseqXP_006484165.18e-35PREDICTED: transcription factor TCP20-like
SwissprotQ9LSD55e-27TCP20_ARATH; Transcription factor TCP20
TrEMBLA0A068UY756e-36A0A068UY75_COFCA; Uncharacterized protein
STRINGPOPTR_0001s13500.13e-30(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24824201
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27010.19e-17TCP family protein